Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015824756.1_cds_XP_016502068.1_15747
CDS Infomation

[gene=LOC107820321] [db_xref=GeneID:107820321] [protein=pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like] [protein_id=XP_016502068.1] [location=complement(join(47118..48420,49013..49842))] [gbkey=CDS]
Sequence

ATGGCGCTGAAACACTCGTTTATCCCGTCTTCTACTTGCTGTACATTACAGGTCAATCAC
TACTCCCATCTCCCTCACCCTGTTCCAATTAGAAAAAATCTCATATGCCTTAGACCATTC
TCTCAATCATCCTTCCTTTCTTTCTCCAGCTCTTGCCTTCCTCATTCTACATCCTCTCCT
CTTTTCCTTTCTTTTCTTGAAGAAGACGAACAAGAATCTGAAGAAGAACTTACTCTTTCA
GAAACCGAGCAGCTAAAACAACCAGACAATGACCCAATTCGACGGTTCTTCCAGACCCGG
ACAGCAGACTTAGAATCCGACCCAGACCCAGGTCGCGAAGGCAAGTTATCATTTTCAAAG
AACCGTAAAACATCTTGGCACCTCGCTTCTATCAATAGTTCAACTGAAAATGACGAGGAC
GAGGTCGAGAACATACCAAAATTACCTCTCGACACACTCTCAAGTCCTAAAAATGAGGGC
GTTGTCAGTGAAATATTGGAAAAGGCGAGGAGTTTACCGGAAAATGTGACGTTAGGGGAG
GTATTAGGGGAATTTGAAAGGAGGGTTGGGGCAAAAGAGTGTGAGGAGGTGCTGGTTTTG
TTAGGAAATGAAGGTTTGGCTATTAATTGCTTGTATTTTTTCGAGTGGATGGGGCTTAAT
GAGCCTTCATTGGTTACACCTCGCGCTTATACGATTTTGTTCCCTATACTTGGGAGGGCT
GGTATGAGCAAGGAGTTGCTAGTTTTGTTTAAAAACTTGCCTGAAAAAAAGGGGTTCAGG
GATGTTCATGTTTATAACGCGGCCATTTCCGGGCTTTTATGCTGTAGAAGGTATGATGAT
GCTTGGGAAGTTTTTGAGTCCATGGAAACAAATTCTGTCCAACCAGACCATGTGACAACT
TCCATTATGATTACAATTATGAGGAAACGGGGCAATAGCGCCAAAGAAGCTTGGGAGTTA
TTTGAAAAGATGAACGGAGAAGGTGTGAAGTGGAGCTTGGAAGTAGCAGGTGCTCTGATT
AAATCCTTTTGTGATGAAGGCCTGAAGAAGGAAGCTTTAATTGTCCAGTCAGAAATGGAG
AAAAAGGGAATATCTTCTAACGTCATTGTCTATAATACTCTGATGCATGCTTACTGTAAA
GCCAACCAAATTGAAGAAGCTGAAGGTCTCTTTGATGAGATGAAGAGGAAAAAAATTGCA
CCTACCTCGGCTACTTACAATATTTTGATGGATGCATACAGTAGGAGACTGCAGCCTGAT
GTTGTTGAGAAACTGCTACTGGAAATGGAAAATGCTGGTTTGGAGCCAAATGTTAAATCG
TATACATGCCTGATCAGTGCCTATGGAAGACTGAAAAAAATGAGTGACATGGCTGCAAAT
GCATTCTTGAGGATGAAAAAGGTTGGTATAAAACCGAATTCTTACTCTTATACAGCTCTT
ATCCATGCCTATTCAATCAGTGGGTGGCATGATAAAGCTTATACAGCTTTTGAGAACATG
CTAAGGGAGGGAATAAAACCCTCGATAGAAACTTATACTGCTCTGCTTGATGCATTTAGA
CGTGCTGGTGATACCCAAACACTCAAGAAAATTTGGAAAATGATGATCAGAGATAAAATT
GAAGGGACAAGGGTGACATTTAACATTCTACTCGATGGATTTGCTAAACAAGGTTGCTAT
GTTGAAGCAAGAGATGTGATTTGTGAGTTTGGGAAGCTTGGTTTACAGCCAACAGTAATG
ACTTACAACATGCTGATCAATGCATATGCAAGAGGAGGACAAGAATCAAGGTTGCCGCAG
CTTGTGAAGGAGATGGCAGCACTTAATCTAAAACCTGATTCTATTACTTATTCCACAATG
ATATATGCCTATATCCGTGTGCGGGATTTCAAGAGGGCATTTTATTATCACAAGCAGATG
GTGAAAAGTCGGCAAGTGCCTGATGCTGAATCATATGAGAAGCTCAGGGCAATTCTGGAT
GTAAAAGCTGCCATAAAGAACAGGAAGGATAAGAGTGCTTTAATGGGAATAGTTAGAAGC
AGTATGGGCTTATTGAAAGAGAAGAAAAAGGGAAAGAAGGATGAGTTCTGGAAAAATAGA
AAAAGAGGATCAAGATTTCAAGGAGGACAGTAA

Peptide Sequence

PEP ID

XP_016502068.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like [Nicotiana tabacum]
Sequence

MALKHSFIPSSTCCTLQVNHYSHLPHPVPIRKNLICLRPFSQSSFLSFSSSCLPHSTSSP
LFLSFLEEDEQESEEELTLSETEQLKQPDNDPIRRFFQTRTADLESDPDPGREGKLSFSK
NRKTSWHLASINSSTENDEDEVENIPKLPLDTLSSPKNEGVVSEILEKARSLPENVTLGE
VLGEFERRVGAKECEEVLVLLGNEGLAINCLYFFEWMGLNEPSLVTPRAYTILFPILGRA
GMSKELLVLFKNLPEKKGFRDVHVYNAAISGLLCCRRYDDAWEVFESMETNSVQPDHVTT
SIMITIMRKRGNSAKEAWELFEKMNGEGVKWSLEVAGALIKSFCDEGLKKEALIVQSEME
KKGISSNVIVYNTLMHAYCKANQIEEAEGLFDEMKRKKIAPTSATYNILMDAYSRRLQPD
VVEKLLLEMENAGLEPNVKSYTCLISAYGRLKKMSDMAANAFLRMKKVGIKPNSYSYTAL
IHAYSISGWHDKAYTAFENMLREGIKPSIETYTALLDAFRRAGDTQTLKKIWKMMIRDKI
EGTRVTFNILLDGFAKQGCYVEARDVICEFGKLGLQPTVMTYNMLINAYARGGQESRLPQ
LVKEMAALNLKPDSITYSTMIYAYIRVRDFKRAFYYHKQMVKSRQVPDAESYEKLRAILD
VKAAIKNRKDKSALMGIVRSSMGLLKEKKKGKKDEFWKNRKRGSRFQGGQ

Transcript Sequence

Gene sequence data has not been registered.